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Luke R. Thompson
Luke R. Thompson
Associate Research Professor, NOAA Northern Gulf Institute
Verified email at noaa.gov - Homepage
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Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
115142019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 2017
20402017
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
13422018
Deblur rapidly resolves single-nucleotide community sequence patterns
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, ZZ Xu, ...
mSystems 2 (2), e00191-16, 2017
12242017
Species-level functional profiling of metagenomes and metatranscriptomes
EA Franzosa, LJ McIver, G Rahnavard, LR Thompson, M Schirmer, ...
Nature methods 15 (11), 962-968, 2018
11892018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
8912018
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018
6102018
Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts
MB Sullivan, D Lindell, JA Lee, LR Thompson, JP Bielawski, ...
PLOS Biology 4 (8), e234, 2006
5002006
Microbial community assembly and metabolic function during mammalian corpse decomposition
JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ...
Science 351 (6269), 158-162, 2016
4692016
Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism
LR Thompson, Q Zeng, L Kelly, KH Huang, AU Singer, JA Stubbe, ...
Proceedings of the National Academy of Sciences 108 (39), E757-E764, 2011
4422011
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4‐like myoviruses from diverse hosts and environments
MB Sullivan, KH Huang, JC Ignacio‐Espinoza, AM Berlin, L Kelly, ...
Environmental Microbiology 12 (11), 3035-3056, 2010
3332010
Exploring the vast diversity of marine viruses
MYA Breitbart, LR Thompson, CA Suttle, MB Sullivan
Oceanography 20 (2), 135-139, 2007
2942007
A novel sparse compositional technique reveals microbial perturbations
C Martino, JT Morton, CA Marotz, LR Thompson, A Tripathi, R Knight, ...
MSystems 4 (1), 10.1128/msystems. 00016-19, 2019
2722019
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
KR Amato, J G. Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ...
The ISME journal 13 (3), 576-587, 2019
2402019
Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus
ER Zinser, D Lindell, ZI Johnson, ME Futschik, C Steglich, ML Coleman, ...
PLOS ONE 4 (4), e5135, 2009
2132009
Physiology and evolution of nitrate acquisition in Prochlorococcus
PM Berube, SJ Biller, AG Kent, JW Berta-Thompson, SE Roggensack, ...
The ISME Journal 9 (5), 1195, 2015
1322015
Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm
JM Michaud, LR Thompson, D Kaul, JL Espinoza, RA Richter, ZZ Xu, ...
Nature Communications 9 (1), 2017, 2018
1182018
DNA sequencing as a tool to monitor marine ecological status
KD Goodwin, LR Thompson, B Duarte, T Kahlke, AR Thompson, ...
Frontiers in Marine Science 4, 107, 2017
1072017
MetaMiner: a scalable peptidogenomics approach for discovery of ribosomal peptide natural products with blind modifications from microbial communities
L Cao, A Gurevich, KL Alexander, CB Naman, T Le„o, E Glukhov, ...
Cell systems 9 (6), 600-608. e4, 2019
602019
EMP 16S Illumina amplicon protocol
JG Caporaso, G Ackermann, A Apprill, M Bauer, D Berg-Lyons, J Betley, ...
552018
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