Professor, Division of Genomics and Precision Medicine, UC San Diego
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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian, P Tamayo, VK Mootha, S Mukherjee, BL Ebert, ...
Proceedings of the National Academy of Sciences 102 (43), 15545-15550, 2005
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
TR Golub, DK Slonim, P Tamayo, C Huard, M Gaasenbeek, JP Mesirov, ...
science 286 (5439), 531-537, 1999
PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
VK Mootha, CM Lindgren, KF Eriksson, A Subramanian, S Sihag, J Lehar, ...
Nature genetics 34 (3), 267-273, 2003
The molecular signatures database hallmark gene set collection
A Liberzon, C Birger, H Thorvaldsdóttir, M Ghandi, JP Mesirov, P Tamayo
Cell systems 1 (6), 417-425, 2015
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1
RGW Verhaak, KA Hoadley, E Purdom, V Wang, Y Qi, MD Wilkerson, ...
Cancer cell 17 (1), 98-110, 2010
Molecular signatures database (MSigDB) 3.0
A Liberzon, A Subramanian, R Pinchback, H Thorvaldsdóttir, P Tamayo, ...
Bioinformatics 27 (12), 1739-1740, 2011
Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation
P Tamayo, D Slonim, J Mesirov, Q Zhu, S Kitareewan, E Dmitrovsky, ...
Proceedings of the National Academy of Sciences 96 (6), 2907-2912, 1999
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning
MA Shipp, KN Ross, P Tamayo, AP Weng, JL Kutok, RCT Aguiar, ...
Nature medicine 8 (1), 68-74, 2002
Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1
DA Barbie, P Tamayo, JS Boehm, SY Kim, SE Moody, IF Dunn, ...
Nature 462 (7269), 108-112, 2009
Gene expression correlates of clinical prostate cancer behavior
D Singh, PG Febbo, K Ross, DG Jackson, J Manola, C Ladd, P Tamayo, ...
Cancer cell 1 (2), 203-209, 2002
Prediction of central nervous system embryonal tumour outcome based on gene expression
SL Pomeroy, P Tamayo, M Gaasenbeek, LM Sturla, M Angelo, ...
Nature 415 (6870), 436-442, 2002
Multiclass cancer diagnosis using tumor gene expression signatures
S Ramaswamy, P Tamayo, R Rifkin, S Mukherjee, CH Yeang, M Angelo, ...
Proceedings of the National Academy of Sciences 98 (26), 15149-15154, 2001
Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data
S Monti, P Tamayo, J Mesirov, T Golub
Machine learning 52, 91-118, 2003
Metagenes and molecular pattern discovery using matrix factorization
JP Brunet, P Tamayo, TR Golub, JP Mesirov
Proceedings of the national academy of sciences 101 (12), 4164-4169, 2004
GenePattern 2.0
M Reich, T Liefeld, J Gould, J Lerner, P Tamayo, JP Mesirov
Nature genetics 38 (5), 500-501, 2006
Dependency of a therapy-resistant state of cancer cells on a lipid peroxidase pathway
VS Viswanathan, MJ Ryan, HD Dhruv, S Gill, OM Eichhoff, ...
Nature 547 (7664), 453-457, 2017
GSEA-P: a desktop application for Gene Set Enrichment Analysis
A Subramanian, H Kuehn, J Gould, P Tamayo, JP Mesirov
Bioinformatics 23 (23), 3251-3253, 2007
Gene expression-based classification of malignant gliomas correlates better with survival than histological classification
CL Nutt, DR Mani, RA Betensky, P Tamayo, JG Cairncross, C Ladd, ...
Cancer research 63 (7), 1602-1607, 2003
Identification of RPS14 as a 5q- syndrome gene by RNA interference screen
BL Ebert, J Pretz, J Bosco, CY Chang, P Tamayo, N Galili, A Raza, ...
Nature 451 (7176), 335-339, 2008
SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas
AJ Bass, H Watanabe, CH Mermel, S Yu, S Perner, RG Verhaak, SY Kim, ...
Nature genetics 41 (11), 1238-1242, 2009
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