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Shuzhao Li
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MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
J Chong, O Soufan, C Li, I Caraus, S Li, G Bourque, DS Wishart, J Xia
Nucleic acids research 46 (W1), W486-W494, 2018
36502018
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
Z Pang, J Chong, G Zhou, DA de Lima Morais, L Chang, M Barrette, ...
Nucleic acids research 49 (W1), W388-W396, 2021
32372021
Predicting network activity from high throughput metabolomics
S Li, Y Park, S Duraisingham, FH Strobel, N Khan, QA Soltow, DP Jones, ...
PLoS computational biology 9 (7), e1003123, 2013
9112013
Systems biology of vaccination for seasonal influenza in humans
HI Nakaya, J Wrammert, EK Lee, L Racioppi, S Marie-Kunze, WN Haining, ...
Nature immunology 12 (8), 786-795, 2011
8942011
Molecular signatures of antibody responses derived from a systems biology study of five human vaccines
S Li, N Rouphael, S Duraisingham, S Romero-Steiner, S Presnell, ...
Nature immunology 15 (2), 195-204, 2014
7702014
Antibiotics-driven gut microbiome perturbation alters immunity to vaccines in humans
T Hagan, M Cortese, N Rouphael, C Boudreau, C Linde, MS Maddur, ...
Cell 178 (6), 1313-1328. e13, 2019
5152019
MetaboAnalystR 3.0: toward an optimized workflow for global metabolomics
Z Pang, J Chong, S Li, J Xia
Metabolites 10 (5), 186, 2020
4842020
Autophagy is essential for effector CD8+ T cell survival and memory formation
X Xu, K Araki, S Li, JH Han, L Ye, WG Tan, BT Konieczny, MW Bruinsma, ...
Nature immunology 15 (12), 1152-1161, 2014
4422014
Systems vaccinology
B Pulendran, S Li, HI Nakaya
Immunity 33 (4), 516-529, 2010
4262010
One step forward for reducing false positive and false negative compound identifications from mass spectrometry metabolomics data: new algorithms for constructing extracted ion …
OD Myers, SJ Sumner, S Li, S Barnes, X Du
Analytical chemistry 89 (17), 8696-8703, 2017
3822017
The amino acid sensor GCN2 controls gut inflammation by inhibiting inflammasome activation
PB Ravindran R, Loebbermann J, Nakaya HI, Khan N, Ma H, Gama L, Machiah DK ...
Nature 531 (7595), 523-7, 2016
2732016
Metabolic phenotypes of response to vaccination in humans
S Li, NL Sullivan, N Rouphael, T Yu, S Banton, MS Maddur, ...
Cell 169 (5), 862-877. e17, 2017
2662017
Computational metabolomics: a framework for the million metabolome
K Uppal, DI Walker, K Liu, S Li, YM Go, DP Jones
Chemical research in toxicology 29 (12), 1956-1975, 2016
2352016
Vaccine activation of the nutrient sensor GCN2 in dendritic cells enhances antigen presentation
R Ravindran, N Khan, HI Nakaya, S Li, J Loebbermann, MS Maddur, ...
Science 343 (6168), 313-317, 2014
2342014
MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation
Z Pang, Y Lu, G Zhou, F Hui, L Xu, C Viau, AF Spigelman, PE MacDonald, ...
Nucleic Acids Research, gkae253, 2024
1912024
Detailed investigation and comparison of the XCMS and MZmine 2 chromatogram construction and chromatographic peak detection methods for preprocessing mass spectrometry …
OD Myers, SJ Sumner, S Li, S Barnes, X Du
Analytical Chemistry 89 (17), 8689-8695, 2017
1832017
Effects of age, sex, and genotype on high‐sensitivity metabolomic profiles in the fruit fly, Drosophila melanogaster
JM Hoffman, QA Soltow, S Li, A Sidik, DP Jones, DEL Promislow
Aging Cell 13 (4), 596-604, 2014
1372014
Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data
S Barnes, HP Benton, K Casazza, SJ Cooper, X Cui, X Du, J Engler, ...
Journal of Mass Spectrometry 51 (7), 461-475, 2016
1192016
mTOR regulates metabolic adaptation of APCs in the lung and controls the outcome of allergic inflammation
C Sinclair, G Bommakanti, L Gardinassi, J Loebbermann, MJ Johnson, ...
Science 357 (6355), 1014-1021, 2017
1162017
Amino Acid Metabolism is Altered in Adolescents with Nonalcoholic Fatty Liver Disease-An Untargeted, High Resolution Metabolomics Study
VMB Jin R, Banton S, Tran VT, Konomi JV, Li S, Jones DP
J Pediatr., 2016
1012016
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