A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ... Genome research 23 (4), 653-664, 2013 | 511 | 2013 |
Whole-genome sequencing for routine pathogen surveillance in public health: a population snapshot of invasive Staphylococcus aureus in Europe DM Aanensen, EJ Feil, MTG Holden, J Dordel, CA Yeats, A Fedosejev, ... MBio 7 (3), 10.1128/mbio. 00444-16, 2016 | 211 | 2016 |
A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin DC Holt, MTG Holden, SYC Tong, S Castillo-Ramirez, L Clarke, MA Quail, ... Genome biology and evolution 3, 881-895, 2011 | 185 | 2011 |
Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus S Castillo-Ramírez, J Corander, P Marttinen, M Aldeljawi, WP Hanage, ... Genome biology 13, 1-13, 2012 | 108 | 2012 |
The impact of recombination on dN/dS within recently emerged bacterial clones S Castillo-Ramírez, SR Harris, MTG Holden, M He, J Parkhill, SD Bentley, ... PLoS pathogens 7 (7), e1002129, 2011 | 101 | 2011 |
Rapid evolutionary change of common bean (Phaseolus vulgaris L) plastome, and the genomic diversification of legume chloroplasts X Guo, S Castillo-Ramírez, V González, P Bustos, ... BMC genomics 8, 1-16, 2007 | 100 | 2007 |
Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus aureus in the Western Hemisphere L Challagundla, J Reyes, I Rafiqullah, DO Sordelli, G Echaniz-Aviles, ... Frontiers in Microbiology 9, 1901, 2018 | 87 | 2018 |
Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance MN Ezewudo, SJ Joseph, S Castillo-Ramirez, D Dean, C Del Rio, ... PeerJ 3, e806, 2015 | 83 | 2015 |
A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria LC Crossman, S Castillo-Ramírez, C McAnnula, L Lozano, GS Vernikos, ... PLoS One 3 (7), e2567, 2008 | 74 | 2008 |
Genetic relationships of Vibrio parahaemolyticus isolates from clinical, human carrier, and environmental sources in Thailand, determined by multilocus sequence analysis C Theethakaew, EJ Feil, S Castillo-Ramï¿ ½rez, DM Aanensen, ... Applied and environmental microbiology 79 (7), 2358-2370, 2013 | 73 | 2013 |
The Rhizobium etli RpoH1 and RpoH2 sigma factors are involved in different stress responses JM Martínez-Salazar, M Sandoval-Calderon, X Guo, S Castillo-Ramírez, ... Microbiology 155 (2), 386-397, 2009 | 63 | 2009 |
Structure and evolution of Acinetobacter baumannii plasmids AD Salgado-Camargo, S Castro-Jaimes, RM Gutierrez-Rios, LF Lozano, ... Frontiers in Microbiology 11, 527210, 2020 | 62 | 2020 |
Two boundaries separate Borrelia burgdorferi populations in North America G Margos, JI Tsao, S Castillo-Ramírez, YA Girard, SA Hamer, AG Hoen, ... Applied and environmental microbiology 78 (17), 6059-6067, 2012 | 60 | 2012 |
Phylogenomics Reveals Clear Cases of Misclassification and Genus-Wide Phylogenetic Markers for Acinetobacter V Mateo-Estrada, L Graña-Miraglia, G López-Leal, S Castillo-Ramírez Genome Biology and Evolution 11 (9), 2531-2541, 2019 | 59 | 2019 |
Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex NS Becker, G Margos, H Blum, S Krebs, A Graf, RS Lane, ... BMC genomics 17, 1-12, 2016 | 54 | 2016 |
Chlamydiaceae Genomics Reveals Interspecies Admixture and the Recent Evolution of Chlamydia abortus Infecting Lower Mammalian Species and Humans SJ Joseph, H Marti, X Didelot, S Castillo-Ramirez, TD Read, D Dean Genome biology and evolution 7 (11), 3070-3084, 2015 | 51 | 2015 |
Microevolution of Renibacterium salmoninarum: evidence for intercontinental dissemination associated with fish movements O Brynildsrud, EJ Feil, J Bohlin, S Castillo-Ramirez, D Colquhoun, ... The ISME journal 8 (4), 746-756, 2014 | 50 | 2014 |
Horizontal gene transfer and diverse functional constrains within a common replication-partitioning system in Alphaproteobacteria: the repABC operon S Castillo-Ramírez, JF Vázquez-Castellanos, V González, MA Cevallos BMC genomics 10, 1-11, 2009 | 47 | 2009 |
Rapid gene turnover as a significant source of genetic variation in a recently seeded population of a healthcare-associated pathogen L Grana-Miraglia, LF Lozano, C Velazquez, P Volkow-Fernandez, ... Frontiers in microbiology 8, 1817, 2017 | 43 | 2017 |
Inaccurate multilocus sequence typing of Acinetobacter baumannii S Castillo-Ramírez, L Graña-Miraglia Emerging infectious diseases 25 (1), 186, 2019 | 40 | 2019 |