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Stefani Thomas
Stefani Thomas
Assistant Professor, University of Minnesota
Verified email at umn.edu - Homepage
Title
Cited by
Cited by
Year
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
9252016
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
BC Collins, CL Hunter, Y Liu, B Schilling, G Rosenberger, SL Bader, ...
Nature communications 8 (1), 291, 2017
5312017
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ...
Nature protocols 13 (7), 1632-1661, 2018
4082018
Alzheimer disease-specific conformation of hyperphosphorylated paired helical filament-Tau is polyubiquitinated through Lys-48, Lys-11, and Lys-6 ubiquitin conjugation
D Cripps, SN Thomas, Y Jeng, F Yang, P Davies, AJ Yang
Journal of Biological Chemistry 281 (16), 10825-10838, 2006
3532006
Advances in mass spectrometry-based clinical biomarker discovery
CA Crutchfield, SN Thomas, LJ Sokoll, DW Chan
Clinical proteomics 13 (1), 1-12, 2016
2822016
Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry–Based Assays
AN Hoofnagle, JR Whiteaker, SA Carr, E Kuhn, T Liu, SA Massoni, ...
Clinical Chemistry 62 (1), 48-69, 2016
2202016
CPTAC Assay Portal: a repository of targeted proteomic assays
JR Whiteaker, GN Halusa, AN Hoofnagle, V Sharma, B MacLean, P Yan, JA Wrobel ...
Nat Methods 11 (7), 703-704, 2014
1712014
Proteomic analysis of exfoliation deposits
B Ovodenko, A Rostagno, TA Neubert, V Shetty, S Thomas, A Yang, ...
Investigative ophthalmology and visual science 48 (4), 1447-1457, 2007
1652007
Lysine methylation is an endogenous post-translational modification of tau protein in human brain and a modulator of aggregation propensity
KE Funk, SN Thomas, KN Schafer, GL Cooper, Z Liao, DJ Clark, AJ Yang, ...
Biochemical Journal 462 (1), 77-88, 2014
1482014
High-throughput proteomic-based identification of oxidatively induced protein carbonylation in mouse brain
BA Soreghan, F Yang, SN Thomas, J Hsu, AJ Yang
Pharmaceutical research 20, 1713-1720, 2003
1422003
Doxorubicin Down-regulates Krüppel-associated Box Domain-associated Protein 1 Sumoylation That Relieves Its Transcription Repression on p21WAF1/CIP1 in Breast Cancer MCF-7 Cells
YK Lee, SN Thomas, AJ Yang, DK Ann
Journal of Biological Chemistry 282 (3), 1595-1606, 2007
1342007
Dual modification of Alzheimer’s disease PHF-tau protein by lysine methylation and ubiquitylation: a mass spectrometry approach
SN Thomas, KE Funk, Y Wan, Z Liao, P Davies, J Kuret, AJ Yang
Acta neuropathologica 123, 105-117, 2012
1272012
Integrated proteomic and glycoproteomic characterization of human high-grade serous ovarian carcinoma
Y Hu, J Pan, P Shah, M Ao, SN Thomas, Y Liu, L Chen, M Schnaubelt, ...
Cell reports 33 (3), 2020
1022020
Site-specific fucosylation analysis identifying glycoproteins associated with aggressive prostate cancer cell lines using tandem affinity enrichments of intact glycopeptides …
J Zhou, W Yang, Y Hu, N Hoti, Y Liu, P Shah, S Sun, D Clark, S Thomas, ...
Analytical chemistry 89 (14), 7623-7630, 2017
742017
Aberrant sphingomyelin/ceramide metabolic-induced neuronal endosomal/lysosomal dysfunction: potential pathological consequences in age-related neurodegeneration
B Soreghan, SN Thomas, AJ Yang
Advanced drug delivery reviews 55 (11), 1515-1524, 2003
712003
Liquid chromatography–tandem mass spectrometry for clinical diagnostics
SN Thomas, D French, PJ Jannetto, BA Rappold, WA Clarke
Nature Reviews Methods Primers 2 (1), 96, 2022
702022
N-GlycositeAtlas: a database resource for mass spectrometry-based human N-linked glycoprotein and glycosylation site mapping
S Sun, Y Hu, M Ao, P Shah, J Chen, W Yang, X Jia, Y Tian, S Thomas, ...
Clinical proteomics 16 (1), 1-11, 2019
702019
Exosomal Proteome Profiling: A Potential Multi-Marker Cellular Phenotyping Tool to Characterize Hypoxia-Induced Radiation Resistance in Breast Cancer
SN Thomas, Z Liao, D Clark, Y Chen, R Samadani, L Mao, DK Ann, ...
Proteomes 1 (2), 87-108, 2013
592013
Molecular features of phosphatase and tensin homolog (PTEN) Regulation by C-terminal phosphorylation
Z Chen, DR Dempsey, SN Thomas, D Hayward, DM Bolduc, PA Cole
Journal of Biological Chemistry 291 (27), 14160-14169, 2016
582016
Quantification of tau protein lysine methylation in aging and Alzheimer’s disease
CJ Huseby, CN Hoffman, GL Cooper, JC Cocuron, AP Alonso, ...
Journal of Alzheimer's Disease 71 (3), 979-991, 2019
442019
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