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Stefani Thomas
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Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
7472016
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
BC Collins, CL Hunter, Y Liu, B Schilling, G Rosenberger, SL Bader, ...
Nature communications 8 (1), 1-12, 2017
3712017
Alzheimer disease-specific conformation of hyperphosphorylated paired helical filament-Tau is polyubiquitinated through Lys-48, Lys-11, and Lys-6 ubiquitin conjugation
D Cripps, SN Thomas, Y Jeng, F Yang, P Davies, AJ Yang
Journal of Biological Chemistry 281 (16), 10825-10838, 2006
3072006
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ...
Nature protocols 13 (7), 1632-1661, 2018
2782018
Advances in mass spectrometry-based clinical biomarker discovery
CA Crutchfield, SN Thomas, LJ Sokoll, DW Chan
Clinical proteomics 13 (1), 1-12, 2016
2332016
Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry–Based Assays
AN Hoofnagle, JR Whiteaker, SA Carr, E Kuhn, T Liu, SA Massoni, ...
Clinical Chemistry 62 (1), 48-69, 2016
1812016
Proteomic analysis of exfoliation deposits
B Ovodenko, A Rostagno, TA Neubert, V Shetty, S Thomas, A Yang, ...
Investigative ophthalmology and visual science 48 (4), 1447-1457, 2007
1472007
CPTAC Assay Portal: a repository of targeted proteomic assays
JR Whiteaker, GN Halusa, AN Hoofnagle, V Sharma, B MacLean, P Yan, JA Wrobel ...
Nat Methods 11 (7), 703-704, 2014
1372014
High-throughput proteomic-based identification of oxidatively induced protein carbonylation in mouse brain
BA Soreghan, F Yang, SN Thomas, J Hsu, AJ Yang
Pharmaceutical research 20 (11), 1713-1720, 2003
1322003
Doxorubicin Down-regulates Krüppel-associated Box Domain-associated Protein 1 Sumoylation That Relieves Its Transcription Repression on p21WAF1/CIP1 in Breast Cancer MCF-7 Cells
YK Lee, SN Thomas, AJ Yang, DK Ann
Journal of Biological Chemistry 282 (3), 1595-1606, 2007
1252007
Lysine methylation is an endogenous post-translational modification of tau protein in human brain and a modulator of aggregation propensity
KE Funk, SN Thomas, KN Schafer, GL Cooper, Z Liao, DJ Clark, AJ Yang, ...
Biochemical Journal 462 (1), 77-88, 2014
1162014
Dual modification of Alzheimer’s disease PHF-tau protein by lysine methylation and ubiquitylation: a mass spectrometry approach
SN Thomas, KE Funk, Y Wan, Z Liao, P Davies, J Kuret, AJ Yang
Acta neuropathologica 123 (1), 105-117, 2012
1082012
Aberrant sphingomyelin/ceramide metabolic-induced neuronal endosomal/lysosomal dysfunction: potential pathological consequences in age-related neurodegeneration
B Soreghan, SN Thomas, AJ Yang
Advanced drug delivery reviews 55 (11), 1515-1524, 2003
682003
Site-specific fucosylation analysis identifying glycoproteins associated with aggressive prostate cancer cell lines using tandem affinity enrichments of intact glycopeptides …
J Zhou, W Yang, Y Hu, N Hoti, Y Liu, P Shah, S Sun, D Clark, S Thomas, ...
Analytical chemistry 89 (14), 7623-7630, 2017
622017
Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma
Y Hu, J Pan, P Shah, M Ao, SN Thomas, Y Liu, L Chen, M Schnaubelt, ...
Cell Reports 33 (3), 108276, 2020
572020
Molecular features of phosphatase and tensin homolog (PTEN) Regulation by C-terminal phosphorylation
Z Chen, DR Dempsey, SN Thomas, D Hayward, DM Bolduc, PA Cole
Journal of Biological Chemistry 291 (27), 14160-14169, 2016
572016
Exosomal Proteome Profiling: A Potential Multi-Marker Cellular Phenotyping Tool to Characterize Hypoxia-Induced Radiation Resistance in Breast Cancer
SN Thomas, Z Liao, D Clark, Y Chen, R Samadani, L Mao, DK Ann, ...
Proteomes 1 (2), 87-108, 2013
532013
N-GlycositeAtlas: a database resource for mass spectrometry-based human N-linked glycoprotein and glycosylation site mapping
S Sun, Y Hu, M Ao, P Shah, J Chen, W Yang, X Jia, Y Tian, S Thomas, ...
Clinical proteomics 16 (1), 1-11, 2019
452019
Neuronal endosomal/lysosomal membrane destabilization activates caspases and induces abnormal accumulation of the lipid secondary messenger ceramide
K Ditaranto-Desimone, M Saito, TL Tekirian, M Saito, M Berg, ...
Brain research bulletin 59 (6), 523-531, 2003
402003
Modification of Sialic Acids on Solid Phase: Accurate Characterization of Protein Sialylation
S Yang, L Zhang, S Thomas, Y Hu, S Li, J Cipollo, H Zhang
Analytical chemistry 89 (12), 6330-6335, 2017
382017
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