Jose M G Izarzugaza

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Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenVerified email at cpr.ku.dk
Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
José Alejandro Romero HerreraPhd Student at Novo Nordisk Foundation - Center For Protein ResearchVerified email at cpr.ku.dk
Miguel VazquezBarcelona Supercomputing Center - Spanish National HPCVerified email at bsc.es
David JuanInstitut de Biologia Evolutiva (UPF-CSIC)Verified email at upf.edu
Christine OrengoProfessor of Bioinformatics, University College LondonVerified email at biochem.ucl.ac.uk
Nicolai Juul BirkbakAssociate professor, Department of Molecular Medicine (MOMA), Aarhus UniversityVerified email at clin.au.dk
Aron Charles EklundClinical Microbiomics A/SVerified email at clinical-microbiomics.com
Carles PonsInstitute for Research in BiomedicineVerified email at irbbarcelona.org
Martin Krallinger*Head of Text Mining Unit, Barcelona Supercomputing Center (BSC-CNS)Verified email at bsc.es
Iakes EzkurdiaSpanish National Cardiovascular Research Center CNICVerified email at cnic.es
Anja Baresicresearch associate, Ruđer Bošković InstituteVerified email at ucl.ac.uk
Andrew C.R. MartinProfessor of Bioinformatics and Computational Biology, University College LondonVerified email at ucl.ac.uk
C Rodríguez-PenagosSenior Researcher at Barcelona Supercomputing CenterVerified email at bsc.es
Francisco X RealSenior Group Leader, CNIO, Madrid; Professor of Cell Biology, Universitat Pompeu Fabra, BarcelonaVerified email at cnio.es
Anaïs BaudotCNRS - Inserm - AMUVerified email at univ-amu.fr
Eduardo Andrés-León (ORCID: 0000-...Head of Bioinformatics Unit at IPBLN-CSIC (grid.429021.c / ROR 05ncvzk72)Verified email at csic.es
Corin YeatsCentre for Genomic Pathogen Surveillance, BDI, OxfordVerified email at bdi.ox.ac.uk

Jose M G Izarzugaza

Novo Nordisk, Bioinformatics and Data Mining Department

Verified email at novonordisk.com - Homepage

Bioinformatics Computational Biology


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Pan-cancer analysis of whole genomes I The, TPCA of Whole, Genomes Consortium Nature 578 (7793), 82, 2020	1054	2020
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020	369	2020
Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios S Besenbacher, S Liu, JMG Izarzugaza, J Grove, K Belling, J Bork-Jensen, ... Nature communications 6, 5969, 2015	167	2015
Tumor Mutation Burden Forecasts Outcome in Ovarian Cancer with BRCA1 or BRCA2 Mutations NJ Birkbak, B Kochupurakkal, JMG Izarzugaza, AC Eklund, Y Li, J Liu, ... PLOS ONE 8 (11), e80023, 2013	140	2013
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference L Maretty, JM Jensen, B Petersen, JA Sibbesen, S Liu, P Villesen, L Skov, ... Nature 548 (7665), 87, 2017	138	2017
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis J Carlevaro-Fita, A Lanzós, L Feuerbach, C Hong, D Mas-Ponte, ... Communications biology 3 (1), 1-16, 2020	112	2020
Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries M Asplund, KR Kjartansdóttir, S Mollerup, L Vinner, H Fridholm, ... Clinical Microbiology and Infection, 2019	96	2019
Propionibacterium acnes: Disease-Causing Agent or Common Contaminant? Detection in Diverse Patient Samples by Next-Generation Sequencing S Mollerup, J Friis-Nielsen, L Vinner, TA Hansen, SR Richter, H Fridholm, ... Journal of clinical microbiology 54 (4), 980-987, 2016	95	2016
Integrative pathway enrichment analysis of multivariate omics data M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ... Nature communications 11 (1), 1-16, 2020	92	2020
Assessment of intramolecular contact predictions for CASP7 JMG Izarzugaza, O Graña, ML Tress, A Valencia, ND Clarke Proteins: Structure, Function, and Bioinformatics 69 (S8), 152-158, 2007	89	2007
Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8 I Ezkurdia, O Grana, JMG Izarzugaza, ML Tress Proteins: Structure, Function, and Bioinformatics 77 (S9), 196-209, 2009	78	2009
Pathway and network analysis of more than 2500 whole cancer genomes MA Reyna, D Haan, M Paczkowska, LPC Verbeke, M Vazquez, ... Nature Communications 11 (1), 1-17, 2020	67	2020
How compelling are the data for Epstein–Barr virus being a trigger for systemic lupus and other autoimmune diseases? A Draborg, JMG Izarzugaza, G Houen Current opinion in rheumatology 28 (4), 398-404, 2016	57	2016
Extraction of human kinase mutations from literature, databases and genotyping studies M Krallinger, JMG Izarzugaza, C Rodriguez-Penagos, A Valencia BMC bioinformatics 10 (8), S1, 2009	40	2009
From cancer genomes to cancer models: bridging the gaps A Baudot, FX Real, JMG Izarzugaza, A Valencia EMBO reports 10 (4), 359-366, 2009	40	2009
Cancer‐associated mutations are preferentially distributed in protein kinase functional sites JMG Izarzugaza, OC Redfern, CA Orengo, A Valencia Proteins: Structure, Function, and Bioinformatics 77 (4), 892-903, 2009	36	2009
Investigation of human cancers for retrovirus by low-stringency target enrichment and high-throughput sequencing L Vinner, T Mourier, J Friis-Nielsen, R Gniadecki, K Dybkaer, J Rosenberg, ... Scientific reports 5, 13201, 2015	35	2015
Combined burden and functional impact tests for cancer driver discovery using DriverPower S Shuai, S Gallinger, L Stein Nature communications 11 (1), 1-12, 2020	31	2020
Prediction of protein interaction based on similarity of phylogenetic trees F Pazos, D Juan, JM Izarzugaza, E Leon, A Valencia Methods Mol Biol 484, 523-535, 2008	31	2008
Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion L Skov, MH Schierup, Danish Pan Genome Consortium PLoS Genetics 13 (8), e1006834, 2017	30	2017

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