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Layla Oesper
Layla Oesper
Associate Professor of Computer Science, Carleton College
Verified email at carleton.edu - Homepage
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
2013*2020
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-2254. e39, 2021
3792021
THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data
L Oesper, A Mahmoody, BJ Raphael
Genome biology 14, 1-21, 2013
2942013
Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine
BJ Raphael, JR Dobson, L Oesper, F Vandin
Genome medicine 6, 1-17, 2014
2662014
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks
L Oesper, D Merico, R Isserlin, GD Bader
Source code for biology and medicine 6, 1-4, 2011
2032011
Reconstruction of clonal trees and tumor composition from multi-sample sequencing data
M El-Kebir, L Oesper, H Acheson-Field, BJ Raphael
Bioinformatics 31 (12), i62-i70, 2015
1982015
Inferring the mutational history of a tumor using multi-state perfect phylogeny mixtures
M El-Kebir, G Satas, L Oesper, BJ Raphael
Cell systems 3 (1), 43-53, 2016
1552016
Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data
L Oesper, G Satas, BJ Raphael
Bioinformatics 30 (24), 3532-3540, 2014
1252014
Reconstructing cancer genomes from paired-end sequencing data
L Oesper, A Ritz, SJ Aerni, R Drebin, BJ Raphael
BMC bioinformatics 13, 1-13, 2012
572012
A consensus approach to infer tumor evolutionary histories
K Govek, C Sikes, L Oesper
Proceedings of the 2018 Acm international conference on bioinformatics …, 2018
502018
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
MH Bailey, WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, ...
Nature communications 11 (1), 4748, 2020
462020
Distance measures for tumor evolutionary trees
Z DiNardo, K Tomlinson, A Ritz, L Oesper
Bioinformatics 36 (7), 2090-2097, 2020
462020
PCAWG Evolution and Heterogeneity Working Group and the PCAWG Consortium. Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-54, 2021
312021
Graphyc: Using consensus to infer tumor evolution
K Govek, C Sikes, Y Zhou, L Oesper
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (1 …, 2020
112020
Identifying simultaneous rearrangements in cancer genomes
L Oesper, S Dantas, BJ Raphael
Bioinformatics 34 (2), 346-352, 2018
82018
p-Coloring classes of torus knots
AL Breiland, L Oesper, L Taalman
Missouri Journal of Mathematical Sciences 21 (2), 120-126, 2009
72009
Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes
C Weinreb, L Oesper, BJ Raphael
BMC genomics 15, 1-11, 2014
62014
A weighted distance-based approach for deriving consensus tumor evolutionary trees
Z Guang, M Smith-Erb, L Oesper
Bioinformatics 39 (Supplement_1), i204–i212, 2023
52023
Expanding undergraduate exposure to computer science subfields: Resources and lessons from a hands-on computational biology workshop
L Oesper, A Vostinar
Proceedings of the 51st ACM Technical Symposium on Computer Science …, 2020
52020
Emerging topics in cancer evolution
M El-Kebir, Q Morris, L Oesper, SC Sahinalp
PACIFIC SYMPOSIUM ON BIOCOMPUTING 2022, 397-401, 2021
42021
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