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Layla Oesper
Layla Oesper
Associate Professor of Computer Science, Carleton College
Verified email at carleton.edu - Homepage
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1779*2020
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-2254. e39, 2021
3102021
THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data
L Oesper, A Mahmoody, BJ Raphael
Genome biology 14, 1-21, 2013
2862013
Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine
BJ Raphael, JR Dobson, L Oesper, F Vandin
Genome medicine 6, 1-17, 2014
2532014
Reconstruction of clonal trees and tumor composition from multi-sample sequencing data
M El-Kebir, L Oesper, H Acheson-Field, BJ Raphael
Bioinformatics 31 (12), i62-i70, 2015
1912015
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks
L Oesper, D Merico, R Isserlin, GD Bader
Source code for biology and medicine 6, 1-4, 2011
1852011
Inferring the mutational history of a tumor using multi-state perfect phylogeny mixtures
M El-Kebir, G Satas, L Oesper, BJ Raphael
Cell systems 3 (1), 43-53, 2016
1452016
Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data
L Oesper, G Satas, BJ Raphael
Bioinformatics 30 (24), 3532-3540, 2014
1252014
Reconstructing cancer genomes from paired-end sequencing data
L Oesper, A Ritz, SJ Aerni, R Drebin, BJ Raphael
BMC bioinformatics 13, 1-13, 2012
552012
A consensus approach to infer tumor evolutionary histories
K Govek, C Sikes, L Oesper
Proceedings of the 2018 Acm international conference on bioinformatics …, 2018
442018
Distance measures for tumor evolutionary trees
Z DiNardo, K Tomlinson, A Ritz, L Oesper
Bioinformatics 36 (7), 2090-2097, 2020
392020
PCAWG Evolution and Heterogeneity Working Group and the PCAWG Consortium. Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-54, 2021
262021
Graphyc: Using consensus to infer tumor evolution
K Govek, C Sikes, Y Zhou, L Oesper
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (1 …, 2020
102020
Identifying simultaneous rearrangements in cancer genomes
L Oesper, S Dantas, BJ Raphael
Bioinformatics 34 (2), 346-352, 2018
82018
Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes
C Weinreb, L Oesper, BJ Raphael
BMC genomics 15, 1-11, 2014
62014
p-Coloring classes of torus knots
AL Breiland, L Oesper, L Taalman
Missouri Journal of Mathematical Sciences 21 (2), 120-126, 2009
62009
A weighted distance-based approach for deriving consensus tumor evolutionary trees
Z Guang, M Smith-Erb, L Oesper
Bioinformatics 39 (Supplement_1), i204–i212, 2023
42023
Expanding undergraduate exposure to computer science subfields: Resources and lessons from a hands-on computational biology workshop
L Oesper, A Vostinar
Proceedings of the 51st ACM Technical Symposium on Computer Science …, 2020
42020
Examining tumor phylogeny inference in noisy sequencing data
K Tomlinson, L Oesper
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018
42018
p-Colorings of Weaving Knots
L Oesper
Citeseer, 2005
42005
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