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Vahid Jalili
Vahid Jalili
Computational Scientist II, Broad Institute of MIT and Harvard
Adresă de e-mail confirmată pe broad.mit.edu
Titlu
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Anul
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
29042018
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ...
Nucleic acids research 48 (W1), W395-W402, 2020
3042020
How machine learning will transform biomedicine
J Goecks, V Jalili, LM Heiser, JW Gray
Cell 181 (1), 92-101, 2020
2372020
GenoMetric Query Language: a novel approach to large-scale genomic data management
M Masseroli, P Pinoli, F Venco, A Kaitoua, V Jalili, F Palluzzi, H Muller, ...
Bioinformatics 31 (12), 1881-1888, 2015
1232015
Using combined evidence from replicates to evaluate ChIP-seq peaks
V Jalili, M Matteucci, M Masseroli, MJ Morelli
Bioinformatics 31 (17), 2761-2769, 2015
592015
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ...
Cell Genomics 2 (1), 2022
512022
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Nucleic Acids Research 50 (W1), W345-W351, 2022
362022
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
E Afgan, A Nekrutenko, BA Grüning, D Blankenberg, J Goecks, ...
Nucleic acids research, 2022
162022
Next generation indexing for genomic intervals
V Jalili, M Matteucci, J Goecks, Y Deldjoo, S Ceri
IEEE Transactions on Knowledge and Data Engineering 31 (10), 2008-2021, 2018
142018
Indexing next-generation sequencing data
V Jalili, M Matteucci, M Masseroli, S Ceri
Information Sciences 384, 90-109, 2017
132017
MuSERA: multiple sample enriched region assessment
V Jalili, M Matteucci, MJ Morelli, M Masseroli
Briefings in bioinformatics 18 (3), 367-381, 2017
122017
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
Q Gu, A Kumar, S Bray, A Creason, A Khanteymoori, V Jalili, B Grüning, ...
PLoS computational biology 17 (6), e1009014, 2021
92021
Federated galaxy: Biomedical computing at the frontier
E Afgan, V Jalili, N Goonasekera, J Taylor, J Goecks
2018 IEEE 11th International Conference on Cloud Computing (CLOUD), 871-874, 2018
82018
Explorative visual analytics on interval-based genomic data and their metadata
V Jalili, M Matteucci, M Masseroli, S Ceri
BMC bioinformatics 18 (1), 1-15, 2017
62017
Cloud bursting galaxy: federated identity and access management
V Jalili, E Afgan, J Taylor, J Goecks
Bioinformatics 36 (1), 1-9, 2020
52020
Systematic evaluation of genome sequencing for the assessment of fetal structural anomalies
C Lowther, E Valkanas, JL Giordano, HZ Wang, BB Currall, K O’Keefe, ...
bioRxiv, 2020.08. 12.248526, 2020
12020
Accessible, Reproducible, and Scalable Machine Learning for Biomedicine
Q Gu, A Kumar, S Bray, A Creason, A Khanteymoori, V Jalili, B Grüning, ...
bioRxiv, 2020.06. 25.172445, 2020
12020
Reasoning with shapes: profiting cognitive susceptibilities to infer linear mapping transformations between shapes
V Jalili
arXiv preprint arXiv:1709.00158, 2017
12017
Efficient data structures for cross-samples inferences on genomic data
V JALILI
Italy, 2016
12016
Rescuing Biologically Relevant Consensus Regions Across Replicated Samples
V Jalili, MA Cremona, F Palluzzi
bioRxiv, 2021.09. 23.461528, 2021
2021
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